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PUBLICATIONS List




Selected list of publications related to the project.

Click on "Author" to achieve an alphabetical list.   //   Click on "Year" to achieve a chronological list.

Peer reviewed article

AuthorTitleRef.YearFile
Dehay C, Kennedy H Cell-cycle control and cortical developmentNature Reviews Neuroscience 8, 438-4502007
Lukaszewicz A, Savatier P, Cortay V, Giroud P, Huissoud C, Berland M, Kennedy H, Dehay C G1 phase regulation, area-specific cell cycle control, and cytoarchitectonics in the primate cortexNeuron 47:353-364.2005 lukaszewicz 05 neuron.pdf
Huberman AD, Dehay C, Berland M, Chalupa LM, Kennedy H Early and rapid targeting of eye-specific axonal projections to the dorsal lateral geniculate nucleus in the fetal macaqueJ Neurosci 25:4014-4023.2005 huberman 05 jn.pdf
Binzegger T, Douglas R, Martin K A quantitative map of the circuit of cat primary visual cortexJ Neurosci 24 (39):8441-84532004 binzegger 04 j neurosci.pdf
Douglas R, Martin K Neuronal Circuits of the NeocortexAnnu Rev Neurosci 27:419-512004
Hahnloser R, Seung S, Slotine JJ Permitted and forbidden sets in symetric threshold-linear networksNeural Comput 15:621-6382003 hahnloser 03 neural comput.pdf
Maass W, Natschläger T, Makram H Real-Time Computing Without Stable States : A New Framework for Neural Computation Based on PerturbationsNeural Comput 14:2531-25602002 maass 02 neural comput.pdf
Maass W, Joshi P, Sontag ED Computational Aspects of Feedback in Neural Circuits PLOS Comput Biol 3:1652007 maass 07 plos comput biol.pdf
Sussillo D, Toyoizumi T, Maass W Self-tuning of Neural Circuits through Short-term Synaptic PlasticityJ Neurophysiol in press2007 sussillo 07 j neurophysiol.pdf
Hahnloser RH, Sarpeshkar R, Mahowald MA, Douglas RJ, Seung HS Digital selection and analogue amplification coexist in a cortex-inspired silicon circuitNature 405:947-9512000
Roth F, Siegelman H, Douglas RJ The Self-Construction and Repair of a Foraging Organism by Explicitly Specified Development from a Single CellArtif Life 13(4):347-682007
Fish JL, Dehay C, Kennedy H and Huttner WB Making bigger brains-the evolution of neural-progenitor-cell divisionJ Cell Sci 121(17):2783-93.2008 fish 08 j cell sci.pdf
Steimer A, Douglas RJ Belief-Propagation in Networks of Spiking NeuronsNeural Comp 21(9):2502-232009 steimer 09 neural comp.pdf
Zhu J, von der Malsburg C Steps toward numerical mode analysis of organizing systemsJ Mathematic Biol 59(3):359-762008 zhu 08 j math biol.pdf
Legenstein R, Pecevski D, Maass W A learning theory for reward-modulated spike-timing-dependent plasticity with application to biofeedbackPLoS Comput Biol 4(10):1-272008 legenstein 08 plos comp biol.pdf
Häusler S, Schuch K, Maass W Motif distribution, dynamical properties and computational performance of two data-based cortical microcircuit templates J Phys Paris 103(1-2):73-872009 haeusler 09 j phys.pdf
Buonomano D, Maass W State-dependent computations: spatiotemporal processing in cortical networksNature Reviews in Neuroscience, 10(2): 113-1252009 buonomano 09 nat rev neuro.pdf
Abellan A, Menuet A, Dehay C, Medina L, Retaux S Differential expression of LIM-homeodomain factors in Cajal-Retzius cells of primates, rodents and birdsCereb Cortex 20(8): 1788-1798 2010 abellan 10 cereb cortex.pdf
Pilaz LJ, Patti D, Marcy G, Ollier E, Pfister S, Douglas RJ, Betizeau M, Gautier E, Cortay V, Doerflinger N, Kennedy H, Dehay C Forced G1 phase reduction alters mode of division, neuron number and laminar phenotype in the cerebral cortexPNAS vol 106(51): 21924-219292009 pnas-2009-pilaz-21924-9.pdf
Dehay C, Kennedy H Transcriptional regulation and alternative splicing make for better brainsNeuron 62 (4): 455-72009 dehay 09 neuron.pdf
Rutishauser U, Douglas RJ, Slotine JJ Collective stability of networks of winner-take-all circuitsNeural Computation 23: 735-7732010 competition_2010.pdf
Zubler F, Douglas R A framework for modeling the growth and development of neurons and networksFront. Comput. Neurosci. 3(25)2009 zubler 09 frontiers in comput neurosci.pdf
Anderson JC, da Costa NM, Martin KA The W cell pathway to cat primary visual cortexJ Comp Neurol 516(1): 20-35.2009 anderson 2009 j comp neurol.pdf
da Costa NM, Hepp K, Martin KAC A systematic random sampling scheme optimized to detect the proportion of rare synapses in the neuropilJ Neurosci Methods 180(1): 77-812009
Bergman U, von der Malsburg C Self-organization of topographic bilinear networks for invariant recognitionNeural Computation, 23 (11): 2770 - 972011 bergmann 11 neural comp.pdf
Büsing L, Maass W A spiking neuron as information bottleneckNeural Computation 22(8): 1-32 1961-19922010 buesing 10 neural comp.pdf
Klampfl S, Maass W A theoretical basis for emergent pattern discrimination in neural systems through slow feature extractionNeural Computation 22(12): 2979 - 30352010 klampfl 2010 j neurocomp.pdf
Legenstein R, Chase SA, Schwartz AB, Maass W A reward-modulated Hebbian learning rule can explain experimentally observed network reorganization in a brain control taskJ Neurosci 30(25): 8400 – 84102009 legenstein 10 j neurosci.pdf
Pfeiffer M, Nessler B, Douglas R, Maass W Reward-modulated Hebbian learning of decision makingNeural Computation 22: 1399-1444 2010 pfeiffer 10 neural comp.pdf
Butz M, Worgotter F, Van Ooyen A Activity-dependent structural plasticityBrain Research Reviews 60(2): 287-305.2009
Jansen R, Linkenkaer-Hansen K, Heistek T, Timmerman J, Mansvelder HD, Brussaard AB, De Gunst M, Van Ooyen A Inbred mouse strains differ in multiple hippocampal activity traitsEur. J. Neuroscience 30(6): 1092-1100.2009 j.1460-9568.2009.06883.x.pdf
Kaiser M, Hilgetag CC, Van Ooyen A A simple rule for axon outgrowth and synaptic competition generates realistic connection lengths and filling fractionsCerebral Cortex 19(12): 3001-30102009 kaiser 09 cereb cortex.pdf
Koene R, Tijms B, van Hees P, Postma F, de Ridder S, Ramakers G, van Pelt J, van Ooyen A NETMORPH: A framework for the stochastic generation of large scale neuronal networks with realistic neuron morphologiesNeuroinformatics 7(3): 195-210.2009 koene 09 neuroinformatics.pdf
Le Feber J, van Pelt J, Rutten W Latency related development of functional connections in cultured cortical networksBiophysical Journal 96(8): 3443-3450.2009 le feber 09 biophys j.pdf
Montez T, Poil SS, Jones B, Manshanden I, Verbunt JPA, Van Dijk BW, Brussaard AB, Van Ooyen A, Stam CJ, Scheltens P, Linkenkaer-Hansen K Altered temporal correlations in parietal alpha and prefrontal theta oscillations in early-stage Alzheimer diseasePNAS 106(5): 1614-1619.2009 pnas-2009-montez-1614-9.pdf
Van Elburg RAJ, Van Ooyen A Generalization of the event-based Carnevale-Hines integration scheme for integrate-and-fire modelsNeural Computation 21(7): 1913-19302009 van elburg 09 neural comp.pdf
Butz M, Wörgötter F, Van Ooyen A A model for cortical remapping and structural plasticity following focal retinal lesionsBMC Neuroscience 2009, 10 (Suppl 1): P206. 18th Annual Computational Neuroscience Meeting, Berlin, Germany, 18-23 July 2009.2009 butz 09 bmc.pdf
Gonzalez OJA, Van Elburg R, Mansvelder H, Van Pelt J, Van Ooyen A Influence of external input on waxing and waning of neuronal network oscillationsBMC Neuroscience, 10 (Suppl 1): P257. 18th Annual Computational Neuroscience Meeting, Berlin, Germany, 18-23 July.2009 gonzalez 09 bmc.pdf
Groen MR, Meredith RM, Sterratt DC, Mansvelder HD, Van Ooyen A Back propagating action potential and distant-dependent calcium signalling in CA1 pyramidal neuronsBMC Neuroscience, 10 (Suppl 1): P336. 18th Annual Computational Neuroscience Meeting, Berlin, Germany, 18-23 July.2009 groen 09 bmc.pdf
Kaiser M, Hilgetag CC, Van Ooyen A Random axon outgrowth and synaptic competition generate realistic connection lengths and filling fractionsBMC Neuroscience 2009, 10 (Suppl 1): P58. 18th Annual Computational Neuroscience Meeting, Berlin, Germany, 18-23 July.2009 kaiser 09 bmc.pdf
Van Elburg RAJ, Bosman, LWJ, Ridder MC, Brussaard AB, Van Ooyen A GABAA receptor plasticity provides homeostasis of neuronal activity in a neocortical microcircuit modelBMC Neuroscience 2009, 10 (Suppl 1): P218. 18th Annual Computational Neuroscience Meeting, Berlin, Germany, 18-23 July2009 van elburb 09 bmc.pdf
Bonnefont J, Laforge T, Plastre O, Beck B, Sorce S, Dehay C, Krause KH Primate-specific RFPL1 gene controls cell-cycle progression through cyclin B1/Cdc2 degradationCell Death Differ 18(2):293-3032011 cdd2010102a.pdf
Pinto L, Drechsel D, Schmid MT, Ninkovic J, Irmler M, Brill MS, Restani L, Gianfranceschi L, Cerri C, Weber SN, Tarabykin V, Baer K, Guillemot F, Beckers J, Zecevic N, Dehay C, Caleo M, Schorle H, Götz M AP2gamma Regulates Basal Progenitor Fate in a Region- and Layer-Specific Manner in the Developing CortexNat Neurosci 12(10): 1229-372009
Da Costa NM, Martin KAC How thalamus connects to spiny stellates in the cat’s visual cortexJ Neurosci 31(8): 2925-29372011 da costa 2011 j neurosci.pdf
Da Costa NM The diversity of thalamorecipient spine morphology in cat visual cortex and its implication for synaptic plasticityJ Comp Neurol.2012 23272_fta.pdf
Nikolic D, Haeusler S, Singer W, Maass W Distributed fading memory for stimulus properties in the primary visual cortexPLoS Biology, 7(12):1-192009 nikolic 09 plos biol.pdf
Roelfsema PR, Van Ooyen A, Watanabe T Perceptual learning rules based on reinforcers and attentionTrends in Cognitive Sciences 14: 64-712010 nihms-169319.pdf
Schmitz SK, Hjorth JJ, Joemai RMS, Wijntjes R, Eijgenraam S, De Bruijn P, Georgiou C, De Jong APH, Van Ooyen A, Verhage M, Cornelisse LN, Toonena RF, Veldkamp W Automated analysis of neuronal morphology, synapse number and synaptic recruitmentJ Neuroscience Meth 195(11): 185–1932011
Van Elburg RAJ, Van Ooyen A Impact of dendritic size and dendritic topology on burst firing in pyramidal cellsPloS Computational Biology 6(5): e10007812010 van elburg 10 plos comp biol.pdf
Van Pelt A, Carnell A, De Ridder S, Mansvelder HD, Van Ooyen A An algorithm for finding candidate synaptic sites in computer generated networks of neurons with realistic morphologiesFrontiers in Computational Neuroscience 4(148)2010 van pelt 10 frontiers.pdf
Butz M, van Ooyen A and Wörgötter F A model for cortical rewiring following differentiation and focal strokeFrontiers in Computational Neuroscience, 3:102009 butz 09 frontiers.pdf
De Ridder A, Postma, F, Hoedemaker S, Koene R, Van Pelt J, Van Ooyen A Simulated networks with realistic neuronal morphologies show small-world connectivityBMC Neuroscience 2009, 10 (Suppl 1): P5. 18th Annual Computational Neuroscience Meeting, Berlin, Germany, 18-23 July2009 de ridder 09 bmc.pdf
Büsing L, Bill J, Nessler B, Maass W Neural Dynamics as Sampling: A Model for Stochastic Computation in Recurrent Networks of Spiking NeuronsPLoS Comput Biol 7(11): e10022112011 journal.pcbi.1002211.pdf
Legenstein R, Maass W Branch-specific plasticity enables self-organization of nonlinear computation in single neuronsJ Neurosci 31(30): 10787-108022011 legenstein 11 j neurosci.pdf
Van Pelt J, Uylings HBM The Flatness of Bifurcations in 3D Dendritic Trees: An Optimal DesignFrontiers in Computational Neuroscience; 5:542012 fncom-05-00054.pdf
Kennedy H, Dehay C Self-organization and interareal networks in the primate cortexProg Brain Res 195:341-3602012 kennedy 2012 prog brain res.pdf
Zubler F, Hauri A, Pfister S, Cook M, Douglas RJ An instruction language for self-construction in the context of neural networksFrontiers in Computer Neuroscience 5(57)2011 zubler 11 frontiers comp neuro.pdf
Hauser H, Ijspert AJ, Füchslin RM, Pfeifer R, Maass W Towards a theoretical foundation for morphological computation with compliant bodiesBiological cybernetics, 105(5-6): 355-702011 hauser 11 bio cybern.pdf
Pecevski D, Büsing L, Maass W Probabilistic inference in general graphical models through sampling in stochastic networks of spiking neuronsPLoS Computational Biology 7(12): e10022942011 pecevski 11 plos comput biol.pdf
Olde Scheper T, Meredith R, Mansvelder H, van Pelt J, van Ooyen A Dynamic Hebbian cross-correlation learning resolves the spike timing dependent plasticity conundrumNature, submitted2012
Butz M, Arjen van Ooyen Need for homeostasis in electrical activity may account for cortical network rewiringBMC neuroscience, 12 (suppl 1)2011 butz 11 bmc.pdf
Carnell A, de Ridder S, van Pelt J, van Ooyen Independently outgrowing neurons with a geometric synapse formation model develop realistic network connectivity patterns with small-world propertiesBMC Neuroscience 12 (suppl 1): 3562011 carnell 11 bmc.pdf
Hjorth JJJ, Broeke J, Mansvelder H, van Pelt J, van Ooyen A The impact of resource competition on neurite outgrowth BMC Neuroscience 12 (suppl 1): 3552011 hjorth 11 bmc.pdf
Olde Scheper T, Mansvelder H, Rhiannon M, van Pelt J, van Ooyen A Hebbian cross-correlation learning emerges as spike timing dependent plasticityBMC Neuroscience 12 (suppl 1): 3552011 olde scheper 11 bmc.pdf
Olde Scheper T Emergent pitch perception using short-term plasticityBMC Neuroscience 10 (suppl1): 1972009 olde scheper 09 bmc.pdf
Steenbuck I, Butz M, Ruiter M, van Ooyen A Small-world topology is most effiscient for homeostatic neuronal network repairBMC Neuroscience 12 (suppl 1): 3572011 steenbuck 11 bmc.pdf
Van Pelt A, Uylings HBM The flatness of bifurcations in 3D neuronal branching patternsBMC Neuroscience 12 (suppl 1): 3492011 van pelt 11 bmc.pdf
Zhu J A Multifactor Winner-Take-All DynamicsNeural Comp 23(7): 1835-18612011
Bauer R, Zubler F, Hauri A, Muir DR and Douglas RJ Developmental Origin of Patchy Axonal Connectivity in the Neocortex: A Computational ModelCereb Cortex, in press2012 bauer 12 cer cor.pdf
Martin KAC and Spühler IA The fine structure of the dopaminergic innervation of area 10 of macaque prefrontal cortexEuropean J Neuroscience: 37(7):1061-712013 ejn12124.pdf
Ohana O, Portner H and Martin KAC Fast Recruitment of Recurrent Inhibition in the Cat Visual CortexPLoS One 7(7):e406012012 journal.pone.0040601.pdf
Hauser H, Ijspeert AJ, Füchslin RM, Pfeifer R and Maass W The role of feedback in morphological computation with compliant bodiesBiological Cybernetics 106(10): 595-6132012 10.1007_s00422-012-0516-4.pdf
Gonzalez OJA, Van Aerde KI, Van Elburg RAJ, Poil SS, Mansvelder HD, Linkenkaer-Hansen K, Van Pelt J and Van Ooyen A External Drive to Inhibitory Cells Induces Alternating Episodes of High- and Low-Amplitude OscillationsPLoS Comput Biol 8(8): e10026662012 journal.pcbi.1002666.pdf
Jansen R, Timmerman J, Loos M, Spijker S, Van Ooyen A, Brussaard AB, Mansvelder HD, The Neuro-Bsik Mouse Phenomics Consortium, Smit AB, de Gunst M, Linkenkaer-Hansen K Novel Candidate Genes Associated with Hippocampal OscillationsPLoS ONE 6(10): e265862011 journal.pone.0026586.pdf
Olde Scheper TV, Mansvelder HD and Van Ooyen A Short Term Depression Unmasks the Ghost FrequencyPLoS ONE 7(12): e501892012 journal.pone.0050189.pdf
Rombouts JO, Van Ooyen A, Roelfsema PR and Bohte SM Biologically Plausible Multi-dimensional Reinforcement Learning in Neural NetworksICANN 2012, Lecture Notes in Computer Science Volume 7552: 443-4502012
Delaunay D, Knoblauch K and Dehay C Mitotic spindle asymmetry: a novel mechanism to generate asymmetrical division in cortical precursors is regulated by Wnt/ PCP signalingNeuron, under revision2013
Sterratt DC, Groen MR, Meredith RM and Van Ooyen A Spine Calcium Transients Induced by Synaptically-Evoked Action Potentials Can Predict Synapse Location and Establish Synaptic DemocracyPLoS Computational Biology 8(6):e10025452012 journal.pcbi.1002545.pdf
Van Pelt J, Uylings HBM, Van Ooyen A Neuronal arborizations, spatial innervation and emergent network connectivitySpringer Series in Computational Neuroscience, in press2013
Van Ooyen A Using theoretical models to analyse neural developmentNature Reviews Neuroscience 12 (6), 311-3262011
Pfister SS,Betizeau M, Dehay C and Douglas, R Robust 3D cell segmentation by local region growing in convex volumesIEEE Conference Proceedings, submitted2013
     

Abstract

AuthorTitleRef.YearFile
Cook M, Rothemund PW, Winfree E Self-assembled circuit patternsLNCS : DNA Computers 9 : 91-1072004
Lücke J, Von der Malsburg C Rapid Correspondence Finding in Networks of Cortical ColumnsICANN 668-6772006
Pilaz LJ, Patti D, Marcy G, Doerflinger N, Cortay V, Kennedy H, Dehay C Role of G1 phase regulation in corticogenesisAbstract n° 37, Brain Development Symposium p.61, London, UK 2008
Gautier E, Doerflinger N, Cortay V, Huissoud C, Giroud P, Berland M, Kennedy H, Dehay C Role of p27kip1 in modulating radial migration in the neocortexFENS Abstr. vol 4, 041.152008
Zubler F, Douglas RJ CX3D: a java package for simulation of cortical development in 3DNeuroinformatics Stockholm, Sweden, Sept 07 - 09, 2008.2008
Zubler F, Douglas RJ Simulation of neural development with CX3DDutch Endo-Neuro-Psycho Meeting, Doorwerth2008
Zubler F, Pfister S, Goehlsdorf D, Douglas RJ Computer simulation of neocortical developmentFENS, Geneva, Switzerland2008
Bauer R, Zubler F, Douglas R Simulation of reaction-diffusion models as pattern formation mechanisms for axon guidanceZNZ Symposium, Zürich, Switzerland2008
Zhu, J Synaptic formation rate as a control parameter in a model for the ontogenesis of retinotopyProc. ICANN, Springer, Lecture Notes in Comp Sci 462-4702008
Neumann G, Peters J Fitted Q-iteration by advantage weighted regressionNIPS 2008: Advances in Neural Information Processing Systems 22, MIT Press2009
Schrauwen B, Büsing L, Legenstein R On computational power and the order-chaos phase transition in reservoir computingNIPS 2008: Advances in Neural Information Processing Systems 22, MIT Press.2009
Nessler B, Pfeiffer M, Maass W Hebbian learning of Bayes optimal decisionsNIPS 2008: Advances in Neural Information Processing Systems 22. MIT Press2009
Betizeau M, Cortay V, Gautier E, Patti D, Kennedy H, Dehay C Characterisation of the primate cortex specific germinal zone: the outer subventricular zone (OSVZ)ISDN 2010, 18th Biennial Conference of the International Society for Developmental Neuroscience. Portugal2010
Dehay C, Pilaz LJ, Kennedy H Uncharted territories of G1 phase regulation: how to turn a mouse cortex into a primate cortex?Evolution of Brain, Behaviour & Intelligence Conference, Wellcome Trust, Cambridge, 9th –12th September, invited communication. 2009
Dehay C, Pilaz LJ, Patti D, Ollier E, Marcy G, Pfister S, Douglas RJ, Doerflinger N, Cortay V, Kennedy H Role of G1 phase regulation in corticogenesis32nd Annual Meeting of the Japan Neuroscience Society, Nagoya, Japan, September 16-182009
Dehay C, Pilaz, LJ, Pfister S, Douglas RJ, Patti D, Doerflinger N, Cortay V, Betizeau M, Gautier E, and Kennedy H G1 phase duration impacts on mode of division, neuron number and laminar phenotype in the cerebral cortex7eme FENS Meeting, Amsterdam2010
Dehay C, Kennedy H Role of cell-cycle parameters in development and evolution of the primate neocortexISDN, 18th Biennial Conference of the International Society for developmental neurosciences. Portugal.2010
Gautier E, Doerflinger N, Cortay V, Huissoud C, Giroud P, Berland M, Kennedy H, Dehay C Role of p27kip1 in modulating radial migration in the neocortexProgram No. 230.19/B9, 2008 Neuroscience Meeting Planner. Washington: Society for Neuroscience, 2008.2008
Gautier E, Cortay V, Betizeau M, Doerflinger N, Kennedy H, Dehay C Area-Specific Dynamics Of Proliferation and Migration During Primate Corticogenesis: Role Of The Modular Protein p27kip1ISDN 2010, 18th Biennial Conference of the International Society for Developmental Neuroscience. Portugal2010
Kennedy H, Markov NT, Ercsey-Ravasz MM, Gariel MA, Vezoli J, Quilodran R, Falchier A, Huissoud C, Clavagnier S, Sallet J, Giroud P, Lamy C, Misery P, Sappey-Marinier D, Barone P, Dehay C, Knoblauch K, Toroczkai Z Heterogeneity of connection strengths and a distance rule specify cortical networks7eme FENS Meeting, Amsterdam2010
Knoblauch K, Gariel MA, Markov NT, Vezoli J, Misery P, Lamy C, Kennedy H Laminar projection patterns in macaque cortex analyzed as ordinal relations using generalized linear models7eme FENS Meeting, Amsterdam2010
Misery P, Markov NT, Falchier A, Lamy C, Vezoli J, Quilodran R, Giroud P, Gariel MA, Ercsey-Ravasz MM, Pilaz LJ, Huissoud C, Barone P, Dehay C, Toroczkai Z, Van Essen DC, Kennedy H, Knoblauch K Area-specific visual cortical connectivity profiles revealed by quantitative brain-wide analysis7eme FENS Meeting, Amsterdam2010
Pilaz LJ, Patti D, Kennedy H, Dehay C In utero electroporation-mediated gene transfer transfects a cohort of synchronously cycling cortical precursors: necessity to develop alternative methods of measuring cell-cycle kinetics7eme FENS Meeting, Amsterdam2010
Pilaz LJ, Patti D, Marcy G, Doerflinger N, Cortay V, Kennedy H, Dehay C Role of G1 phase regulation in corticogenesisCortical development meeting, 22-25 May Chania, Crete, Greece 2008
Pilaz LJ, Patti D, Marcy G, Doerflinger N, Cortay V, Kennedy H, Dehay C Role of G1 phase regulation in corticogenesisFENS Abstr. vol 4, 009.18, 2008 2008
Pilaz LJ, Patti D, Marcy G, Doerflinger N, Cortay V, Kennedy H, Dehay C Role of G1 phase regulation in corticogenesisProgram No. 24.2/A24, 2008 Neuroscience Meeting Planner. Washington: Society for Neuroscience2008
Vezoli J, Gariel MA, Markov NT, Falchier A, Quilodran R, Anderson JC, Dehay C, Douglas R, Martin KAC, Barone P, Toroczkai Z, Knoblauch K, Kennedy H Neocortical Strong Loops: A framework for consciousness? Toward a science of consciousnessHong Kong, China, June 11-14.2009
Bauer R, Zubler F, Douglas RJ Simulating the Development of Self-organizing Winner-Take-All NetworksZNZ Symposium, Zürich, Switzerland2009 bauer 09 znz.pdf
Cook M, Jug F, Krautz C Sharpening Projections: Inter-Area projections can be effectively sharpened by biologically plausible learning mechanismsCNS2009
Goehlsdorf D, Zubler F, Cook M Robust simulation of cell-interactions using three-dimensional Delaunay triangulationsZNZ Symposium, Zürich, Switzerland2008
Hauri A, Zubler F, Douglas RJ Simulation of the developmental migration of neocortical inhibitory neurons, using CX3DINCF Neuroinformatics Congress Kobe, Japan2010
Pfister S, Hauri A, Zubler Z, Bauer R, Whatley A, Douglas R Computer simulation of cortical development2nd INCF Congress of Neuroinformatics 2009
Pfister S, Hauri A, Zubler F, Bauer R, Whatley A, Douglas RJ Computer simulation of cortical developmentZNZ Symposium, Zürich, Switzerland2009
Pfister S, Douglas RJ Cortical development as a case example for understanding self-constructing systemsBIO-ICT Convergence, Brussels2010
Pfister S, Douglas RJ Encoding developmental lineage trees in a gene-like networkBIO-ICT Convergence, Brussels2010
Zubler F, Douglas RJ An instruction code for the explicit programming of axonal growth patterns2010 IEEE World Congress on Computational Intelligence July 18-23, 2010, Barcelona2010
Anderson JC, da Costa NM, Martin KAC The W projection to cat primary visual cortex, including layer 1, that "crowning mystery"Meeting of the Swiss Society for Neuroscience2009
Klampfl S, Maass W Replacing supervised classification learning by Slow Feature Analysis in spiking neural networksNIPS 2009: Advances in Neural Information Processing Systems 22, 2010. MIT Press2010 klampfl 10 nips.pdf
Legenstein R, Chase SA, Schwartz AB, Maass W Functional network reorganization in motor cortex can be explained by reward-modulated Hebbian learningNIPS 2009: Advances in Neural Information Processing Systems 22, 2010. MIT Press.2010 legenstein 10 nips.pdf
Nessler B, Pfeiffer M, Maass W STDP enables spiking neurons to detect hidden causes of their inputsNIPS 2009: Advances in Neural Information Processing Systems 22, 2010. MIT Press.2010 nessler 10 nips.pdf
Butz M, Wörgötter F, Van Ooyen A Modelling experience-dependent structural plasticity in cortical circuits8th Dutch Endo-Neuro-Psycho Meeting, Doorwerth, The Netherlands, 3-5 June 2009, p. 171.2009 butz 09 enp.pdf
Gonzalez OJA, Van Elburg R, Mansvelder H, Van Pelt J, Van Ooyen A Influence of external input on waxing and waning of neuronal network oscillations8th Dutch Endo-Neuro-Psycho Meeting, Doorwerth, The Netherlands, 3-5 June, p. 193. 2009 gonzales 09 enp.pdf
Groen MR, Meredith RM, Sterratt DC, Mansvelder HD, Van Ooyen A Distant-dependent calcium signalling in CA1 pyramidal neurons8th Dutch Endo-Neuro-Psycho Meeting, Doorwerth, The Netherlands, 3-5 June, p. 1942009 groen 09 enp.pdf
Olde Scheper T, Mansvelder H, Rhiannon M, van Pelt J, van Ooyen A Dynamic Spike Timing Dependent Plasticity Rules7th FENS forum of European Neuroscience, Amsterdam, The Netherlands, July 3-7, 20102010
Van Pelt J Advances in the automatic analysis of multi-dimensional data 2nd INCF Congress of Neuroinformatics, at the 2nd INCF Congress of Neuroinformatics, September 6-8, Pilsen, Czech Republic.2009 van pelt 09 incfa.pdf
van der Heiden L, Vadja I, Van Pelt J, van Ooyen A Stimulation induced transitions in spontaneous firing rates in cultured neuronal networks also occurs in the presence of synaptic plasticity blocker KN93Second International Conference on Cognitive Neurodynamics, November 15-19, Hangzhou, China.2009 vanderheiden 09 iccn.pdf
Van Pelt J Stochasticity and constraints in modeling neuronal morphological developmentSecond Polish-Norwegian Neuroinformatics Workshop, January 14-15, Warsaw, Poland.2010
Van Pelt J Analysing and Modelling the Neural System in Health and DiseaseFebruary 1-3, 2010, Informatics Forum, Edinburgh, Scotland, INCF and Neuroinformatics in the Netherlands2010
Watling LA, Geerts R, Roelfsema PR, Van Ooyen A The attention-gated reinforcement learning model can explain experimentally observed changes in tuning curves that follow category learning7th FENS Forum of European Neuroscience, Amsterdam, The Netherlands2010 watling 10 fens.pdf
Watling L, Roelfsema P, Van Ooyen A The attention-gated reinforcement learning model: performance and predictionsFrontiers in Systems Neuroscience. Conference Abstract: Computational and systems neuroscience, Salt Lake City, Utah, USA, 26 February - 3.2009 watling 09 cosyne.pdf
Pfister S, Dehay C, Kennedy H, Douglas RJ Projection of cell lineages in low dimensionsProceedings of NeuroComp2010, 23:735-773, Lyon2010
Kennedy H, Douglas RJ Making headway in successfully applying the way in which the brain works to man-made technologyFET Conference Prague, April 21 – 232009
Pfister S, Dehay C, Kennedy H, Douglas RJ Finite state machine model of cortical developmentNeuroComp2010, Lyon, 6-8 October2010
Cook M, Jug F, Krautz C, Steger A Unsupervised Learning of RelationsInternational Conference on Artificial Neural Networks (1), pp. 164-1732010
Cook M, Jug F, Krautz C Neuronal Projections Can Be Sharpened by a Biologically Plausible Learning MechanismICANN 2011, Lecture Notes in omputer science 6791: 101-082011
Bauer R, Pfister S, Douglas RJ Self-organizing Winner-Take-All networksNeuroinformatics INCF 2010 Kobe, Japan, 4-6 Sept. 2010 bauer 10 incf.pdf
Douglas RJ Neuromorphic Self-ConstructionNeuroComp2010, Lyon, 6-8 October Plenary Lecture2010
Hauri A, Da Costa N, Douglas RJ, Martin K Topology of thalamic axons suggests two developmental modes during innervation of visual cortexNeuroinformatics INCF 2010 Kobe, Japan, 4-6 Sept2010
Da Costa NM, Hepp K and Martin KAC A systematic random sampling scheme optimized to detect the proportion of rare synapses in the neuropilMeeting of the Swiss Society for Neuroscience2009
Bergmann U, Von der Malsburg C A Bilinear Model for Consistent Topographic RepresentationsInternational Conference on Artificial Neural Networks2010 bergmann 10 icann.pdf
Zhu J, Bergmann U, Von der Malsburg U Self-organization of Steerable Topographic Mappings as Basis for Translation InvarianceInternational Conference on Artificial Neural Networks 2010 zhu 10 icann.pdf
Zhu J Self-organization of two interacting winner-take-all systemsInternational Joint Conference on Neural Networks (IJCNN)2010 zhu 10 ijcnn.pdf
Carnell A, De Ridder S, Mansvelder H, Van Pelt, Van Ooyen A Simulated networks with realistic neuronal morphologies show small world connectivity7th FENS Forum of European Neuroscience, July 3-7, 2010, Amsterdam, the Netherlands2010
Gonzales A, Van Aerde K, Van Elburg R, Mansvelder H, Van Pelt J, Van Ooyen A Understanding waxing and waning of cortical oscillations: A modeling approach7th FENS Forum of European Neuroscience, July 3-7, 2010, Amsterdam, the Netherlands2010
Olde Scheper T Dynamic SDTP ModelSECO Progress Meeting, October 4-5, 2010, Lyon2010
Olde Scheper T, Meredith R, Mansvelder H, Van Pelt J, Van Ooyen A Dynamic spike timing dependent plasticity rules7th FENS Forum of European Neuroscience, July 3-7, 2010, Amsterdam, the Netherlands2010
Van Pelt J Neuronal Morphology – Reconstruction, Quantification and Modeling at the Lorentz Workshop Modeling with Images in the Life SciencesLorentz Center, Leiden, the Netherlands2010
Van Pelt J, De Ridder S, Hoedemaker S, Postma F, Koene RA, Van Ooyen A Emerging synaptic connectivity in simulated networks of outgrowing neurons with realistic morphologies using NETMORPH2nd INCF Congress of Neuroinformatics. Pilsen, Czech Republic, September 6-82009 van pelt 09 incfb.pdf
Kennedy H Weight heterogeneity and the specificity of interareal cortical networksNeuroinformatics 2011 INCF, Boston USA2011
Bauer R, Zubler F, Douglas RJ Simulating the development of the superficial patch systemNeuroinformatics 2011 INCF, Boston USA2011 bauer 11 incf.pdf
Bauer R, Zubler F, Douglas RJ Simulating the development of the superficial patch systemZNZ symposium 2011, Zurich, Switzerland2011 bauer 11 znz.pdf
Bauer R, Zubler F, Douglas RJ Self-organizing Winner-take-all networksZNZ symposium 2010, Zurich2010 bauer 10 znz.pdf
Douglas RJ Constructive Cortical ComputationThe European Future Emerging Technologies (FET), Conference exhibition, Budapest, Hungary2011
Douglas RJ Development of brain and mind12th Summer Workshop on 'mechanism of brain and mind', Kobe, Japan2011
Douglas RJ Constructive cortical computationMPI Brain Research Seminar, Frankfurt, Germany2011
Douglas RJ Plenary lecture: neuromorphic self-constructionNeurocomp 2012, Lyon2010
Douglas RJ Plenary lecture: Some computational principles derived from cortical neuroanatomyNeuroinformatics INCF, 2010 Kobe, Japan2010
Hauri A, Douglas RJ CX3Dp: A parallel framework for modeling the growth and development of neural tissueNeuroinformatics 2011 INCF, Boston USA2011
Hauri A, Zubler F, Douglas RJ CX3Dp: A parallel framework for modeling the growth and development of neural tissueZNZ symposium, Zürich, Switzerland2011
Pfister S, Douglas RJ, Kennedy H, Dehay C Developmental motifs in cerebral cortex developmentNeuroinformatics 2011 INCF, Boston USA2011
Pfister S, Douglas RJ, Kennedy H, Dehay C Developmental motifs in cerebral cortex developmentZNZ Symposium, Zürich, Switzerland2011
Zubler F, Douglas RJ Understanding cortical development as self constructionInvited review for Frontier in computer neuroscience2011
Da Costa NM, Perella M, Martin KAC Mapping of the circuit diagram of the mouse auditory cortexChampalimaud Neuroscience Symposum2011
Perella M, Da Costa NM, Martin KAC Canonical circuits in mouse auditory cortexMeeting of the Swiss SOciety for Neuroscience2011
Riday C, Da Costa NM, Martin KAC How many synapses does a mouse auditor cortical neuron formsMeeting of the Swiss Society for Neuroscience2012
Baljon PL, van Pelt J, van Ooyen A Modeling axon outgrowth in an inhomogeneous environmentINCF Congress Neuroinformatics - Munich2012 baljon 2012 incf.pdf
Betizeau M, Cortay C, Patti D, Bellemin-Ménard A, Pfeiffer M, Pfister S, Douglas RJ, Kennedy H and Dehay C Unique dynamics of germinal zones and precursor diversity during primate corticogenesis11th colloquium of Société des Neurosciences2013
Da Costa NM and Martin KAC The diversity of thalamorecipient spine morphology in cat visual cortex and its implication for synaptic plasticity7th FENS Forum of European, Amsterdam, The Netherlands2010
Dehay C, Kennedy K Area-specific coordinated changes in rates of proliferation and radial migration during development in the primate cortexNeuro 2013, Kyoto, Japan2013
Dehay C, Betizeau M, Gautier E, Kennedy H Area-specific dynamics of proliferation and radial migration during primate corticogenesis11th colloquium of Société des Neurosciences, Lyon, 21-24 May2013
Bauer R, Pfister S, Hauri A, Douglas RJ Self-Organization of Winner-Take-All NetworksINCF Neuroinformatics Munich, 10-12 September2012
Bauer R, Zubler F, Hauri A, Muir D, Douglas RJ Simulating the Development of the Superficial Patch SystemNCCR Neuro Concluding Symposium Zürich, 14-15 June2012
Bauer R, Zubler F, Douglas RJ Axon Guidance using Turing Patterns in the CortexZNZ Symposium, Zürich, Switzerland2008
Pfister SS, Betizeau M, Dehay C, Douglas RJ Robust 3D cell segmentation by local region growing in convex volumesIEEE Conference Proceedings ISBI, 2013 in San Francisco2013
da Costa NM, Riday C, Perrella M, Huang Y, Martin KAC A quantitative comparision between the visual cortex of the cat and the auditory cortex of the mouseNeuronal Circuits, Cold Spring Harbor Laboratories, USA2012
da Costa, NM The thalamocortical pathway artistically consideredMeeting of the Swiss Society of Optics and Microscopy, Les Diablerets, Switzerland2012
Hauri A, da Costa NM, Douglas RJ, Martin KAC Topology of thalamic axons suggests two developmental modes during enervation of visual cortexMeeting of the Swiss Society for Neuroscience2012
Keller A, da Costa NM and Martin KAC On recruitment in cat visual cortexMeeting of the Swiss Society for Neuroscience, Geneva, Switzerland2013
Perrella M, da Costa NM and Martin KAC Mapping the matrix of mouse auditory cortexMeeting of the Swiss Society for Neuroscience, Geneva, Switzerland2013
Perrella, M, da Costa NM and Martin KAC Mapping the matrix of mouse auditory cortexMeeting of the Swiss Society for Neuroscience, Zürich, Switzerland2012
Perrella, M, da Costa NM and Martin KAC Mapping the matrix of mouse auditory cortexInternational Auditory Cortex Conference, Lausanne, Switzerland2012
Perrella, M, da Costa NM and Martin KAC Canonical circuits of mouse auditory cortexAnnual Symposium of the Zurich Neuroscience Center, Zürich, Switzerland2012
Perrella, M, da Costa NM and Martin KAC Canonical circuits in mouse auditory cortexMeeting of the Swiss Society for Neuroscience2011
Riday C, da Costa NM and Martin KAC Auditory versus motor cortex, a structural comparison in the mouseMeeting of the Swiss Society for Neuroscience, Geneva, Switzerland2013
Fernandes T, von der Malsburg C Self-Organization of Control Circuits for Fiber Projections Invariant to Position, Size and OrientationFront. Comput. Neurosci. Conference Abstract: Bernstein Conference2012
Habenschuss S, Bill J, Nessler B Homeostatic plasticity in Bayesian spiking networks as Expectation Maximization with posterior constraintsNIPS 2012: Advances in Neural Information Processing Systems 252012
Butz M, Van Ooyen A Need for homeostasis in electrical activity may account for cortical network rewiringTwentieth Annual Computational Neuroscience Meeting: CNS 20112011
Butz M, Wörgötter F, Van Ooyen A A model for cortical remapping and structural plasticity following focal retinal lesions18th Annual Computational Neuroscience Meeting, Berlin, Germany, 18-23 July2009
Carnell A, de Ridder S, van Pelt J, van Ooyen A Independently outgrowing neurons with a geometric synapse formation model develop realistic network connectivity patterns with smallworld propertiesCNS 2011, July 23-28, Stockholm, Sweden2011
Gonzalez OJA, Van Elburg R, Mansvelder H, Van Pelt J, Van Ooyen A Influence of external input on waxing and waning of neuronal network oscillations18th Annual Computational Neuroscience Meeting, Berlin, Germany, 18-23 July2009
Groen MR, Meredith RM, Sterratt DC, Mansvelder HD, Van Ooyen A Back propagating action potential and distant-dependent calcium signalling in CA1 pyramidal neurons18th Annual Computational Neuroscience Meeting, Berlin, Germany, 18-23 July2009
Hjorth JJJ, Broeke J, Mansvelder H, van Pelt J, van Ooyen A The impact of resource competition on neurite outgrowthCNS 2011, July 23-28, Stockholm, Sweden2011
Kaiser M, Hilgetag CC, Van Ooyen A Random axon outgrowth and synaptic competition generate realistic connection lengths and filling fractions18th Annual Computational Neuroscience Meeting, Berlin, Germany, 18-23 July2009
Olde Scheper T, Meredith R, Mansvelder H, van Pelt J, van Ooyen A Hebbian cross-correlation learning emerges as spike timing dependent plasticityCNS 2011, July 23-28, Stockholm, Sweden2011
Olde Scheper T Emergent pitch perception using short term plasticityCNS 2009, July 8-23, 2009, Berlin, Germany2009
Steenbuck I, Butz M, Ruiter M, van Ooyen A Small-world topology is most efficient for homeostatic neuronal network repairCNS 2011, July 23-28, Stockholm, Sweden2011
Van Elburg RAJ, Bosman, LWJ, Ridder MC, Brussaard AB, Van Ooyen A GABAA receptor plasticity provides homeostasis of neuronal activity in a neocortical microcircuit model18th Annual Computational Neuroscience Meeting, Berlin, Germany, 18-23 July2009
Van Ooyen A Influence of dendritic morphology on firing patternWorkshop on Single Neuron Morphologies and Computation, Amsterdam, The Netherlands, 8-9 July 2010 (invited main speaker)2010
Van Ooyen A Impact of dendritic size and dendritic topology on burst firing in pyramidal cellsConference on Mathematical Neuroscience, Edinburgh, UK, 19-21 April 2010 (invited main speaker)2010
Van Pelt J From growth cones to functional networks - a model-based approach to understandingCNS 2011Workshop Dendrite Function and Wiring: Experiments and Theory, July 27, 2011, Stockholm, Sweden2011
Van Pelt J, Uylings HBM The flatness of bifurcations in 3D neuronal branching patternsCNS 2011, July 23-28, Stockholm, Sweden2011
Van Pelt J, De Ridder S, Hoedemaker S, Postma F, Koene RA, Van Ooyen A Emerging synaptic connectivity in simulated networks of outgrowing neurons with realistic morphologies using NETMORPHAnnual Meeting Neuroscience Campus Amsterdam, April 1, 2010, VU University Amsterdam2010
Van Pelt J, Carnell A, De Ridder A, Mansvelder H, Van Ooyen A An algorithm for finding candidate synaptic sites in computer generated networks of neurons with realistic morphologies3rd INCF Congress on Neuroinformatics, August 30 – September 1, 2010, Kobe, Japan2010
Watling LA, Geerts R, Roelfsema PR, Van Ooyen A The attention-gated reinforcement learning model can explain experimentally observed changes in tuning curves that follow category learning8th Dutch Endo-Neuro-Psycho Meeting, Doorwerth, The Netherlands, 3-5 June p. 2102009
     

Other

AuthorTitleRef.YearFile
Neumann G, Wolfgang Maass, Peters J Learning complex movements by sequencing simpler motion templatesICML 2009: International Conference on Machine Learning2009 10.1.1.149.7267.pdf
Maass W Motivation, theory, and applications of Liquid State MachinesIn: B. Cooper, A. Sorbi (eds.): Computability in Context: Computation and Logic in the Real World, Imperial College Press2009
Baljon PL Stabilisation and plasticity of network activity during early cortical developmentSECO Progress Meeting, October 4-5, 2010, Lyon2010
Carnell A A geometric approach to synapse formation in NETMORPHSECO Progress Meeting, October 4-5, 2010, Lyon2010
Hjorth J Does tubulin dynamics result in competition between outgrowing neurites?SECO Progress Meeting, October 4-5, 2010, Lyon2010
Van Pelt J NETMORPH - A simulation tool for studying the development and function of neuronal morphologies and networksWorkshop Single Neuron Morphologies & Computation, July 8-9, 2010. VU University Amsterdam, the Netherlands2010
Douglas RJ Discussions at the 'Science Café'The European Future Emerging Technologies (FET), Conference exhibition, Budapest, Hungary2011
Van Ooyen A Attention-gated reinforcement learningSeminar at Department of Artificial Intelligence, University of Groningen, The Netherlands, 13 April2010
Van Pelt J Modeling Neuronal Morphogenesis and Network FormationLecture at Neuroinformatics and Computational Neuroscience - PhD course #2534, April 25, 2012, Karolinska Institutet, Stockholm, Sweden2012
Van Pelt J Methods for 3D reconstruction and analysis of neuronal tree structuresLecture at Course Stereology and Morphometry in Neuroscience, March 22, 2012, VU Medical Center Amsterdam, the Netherlands2012
Van Pelt J Computational modeling of neuronal morphology and network formationLecture at Course Stereology and Morphometry in Neuroscience, March 22, 2012, VU Medical Center Amsterdam, the Netherlands2012
Van Pelt J Neuronal Morphology and Network Connectivity - A Neuroinformatics ApproachLecture at Farewell symposium Prof. Dr. Harry B.M. Uylings, Brain shaping: from early development into adulthood, VU Medical Center, October 28, 2011, Amsterdam, the Netherlands2011
Van Pelt J Neuroinformatics - Data, Analysis and Modeling in the NeurosciencesLecture at CNCR Seminar Series, VU University Amsterdam, Center for Neurogenomics and Cognitive Research, Neuroscience Campus Amsterdam, March 16, 2011, Amsterdam, the Netherlands2011
Van Pelt J Organization of Workshop Advances in the automatic analysis of multidimensional data2nd INCF Congress of Neuroinformatics, September 6-8, Pilsen, Czech Republic2009
     

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