Self-Constructing
Computing Systems
SECO Project
Private Web
User:
Password:
Not yet a member ?

Arjen van Ooyen




Position:

Company:

Research interest:


External Link:
E-mail: arjen.van.ooyen@cncr.vu.nl
Phone:
Fax:

Mailing Address:


-






Publications :
Selected list of publications related to the project.

  • Olde Scheper T, Meredith R, Mansvelder H, van Pelt J, van Ooyen A - Dynamic Hebbian cross-correlation learning resolves the spike timing dependent plasticity conundrum (2012), Nature, submitted
  • Baljon PL, van Pelt J, van Ooyen A - Modeling axon outgrowth in an inhomogeneous environment (2012), INCF Congress Neuroinformatics - Munich
  • Schmitz SK, Hjorth JJ, Joemai RMS, Wijntjes R, Eijgenraam S, De Bruijn P, Georgiou C, De Jong APH, Van Ooyen A, Verhage M, Cornelisse LN, Toonena RF, Veldkamp W - Automated analysis of neuronal morphology, synapse number and synaptic recruitment (2011), J Neuroscience Meth 195(11): 185–193
  • Butz M, Arjen van Ooyen - Need for homeostasis in electrical activity may account for cortical network rewiring (2011), BMC neuroscience, 12 (suppl 1)
  • Carnell A, de Ridder S, van Pelt J, van Ooyen - Independently outgrowing neurons with a geometric synapse formation model develop realistic network connectivity patterns with small-world properties (2011), BMC Neuroscience 12 (suppl 1): 356
  • Hjorth JJJ, Broeke J, Mansvelder H, van Pelt J, van Ooyen A - The impact of resource competition on neurite outgrowth (2011), BMC Neuroscience 12 (suppl 1): 355
  • Olde Scheper T, Mansvelder H, Rhiannon M, van Pelt J, van Ooyen A - Hebbian cross correlation learning emerges as spike timing dependent plasticity (2011), BMC Neuroscience 12 (suppl 1): 355
  • Steenbuck I, Butz M, Ruiter M, van Ooyen A - Small-world topology is most effiscient for homeostatic neuronal network repair (2011), BMC Neuroscience 12 (suppl 1): 357
  • Olde Scheper T, Mansvelder H, Rhiannon M, van Pelt J, van Ooyen A - Dynamic Spike Timing Dependent Plasticity Rules (2010), 7th FENS forum of European Neuroscience, Amsterdam, The Netherlands, July 3-7, 2010.
  • Watling LA, Geerts R, Roelfsema PR, Van Ooyen A - The Attention-Gated Reinforcement Learning Model can explain experimentally observed changes in tuning curves that follow category learning (2010), 8th Dutch Endo-Neuro-Psycho Meeting, Doorwerth, The Netherlands, 3-5 June p. 210.
  • Roelfsema PR, Van Ooyen A, Watanabe T - Perceptual learning rules based on reinforcers and attention (2010), Trends in Cognitive Sciences 14: 64-71
  • Van Elburg RAJ, Van Ooyen A - Impact of dendritic size and dendritic topology on burst firing in pyramidal cells (2010), PloS Computational Biology 6(5): e1000781
  • Van Pelt A, Carnell A, De Ridder S, Mansvelder HD, Van Ooyen A - An algorithm for finding candidate synaptic sites in computer generated networks of neurons with realistic morphologies (2010), Frontiers in Computational Neuroscience 4(148)
  • Carnell A, De Ridder S, Mansvelder H, Van Pelt, Van Ooyen A - Simulated networks with realistic neuronal morphologies show small world connectivity (2010), 7th FENS Forum of European Neuroscience, July 3-7, 2010, Amsterdam, the Netherlands
  • Gonzales A, Van Aerde K, Van Elburg R, Mansvelder H, Van Pelt J, Van Ooyen A - Understanding waxing and waning of cortical oscillations: A modeling approach (2010), 7th FENS Forum of European Neuroscience, July 3-7, 2010, Amsterdam, the Netherlands
  • Olde Scheper T, Meredith R, Mansvelder H, Van Pelt J, Van Ooyen A - Dynamic spike timing dependent plasticity rules (2010), 7th FENS Forum of European Neuroscience, July 3-7, 2010, Amsterdam, the Netherlands
  • Van Pelt J, Carnell A, De Ridder A, Mansvelder H, Van Ooyen A - An algorithm for finding candidate synaptic sites in computer generated networks of neurons with realistic morphologies (2010), 3rd INCF Congress on Neuroinformatics, August 30 – September 1, 2010, Kobe, Japan
  • Butz M, Worgotter F, Van Ooyen A - Activity-dependent structural plasticity (2009), Brain Research Reviews 60(2): 287-305.
  • Jansen R, Linkenkaer-Hansen K, Heistek T, Timmerman J, Mansvelder HD, Brussaard AB, De Gunst M, Van Ooyen A - Inbred mouse strains differ in multiple hippocampal activity traits (2009), Eur. J. Neuroscience 30(6): 1092-1100.
  • Kaiser M, Hilgetag CC, Van Ooyen A - A simple rule for axon outgrowth and synaptic competition generates realistic connection lengths and filling fractions (2009), Cerebral Cortex 19(12): 3001-3010
  • Koene R, Tijms B, van Hees P, Postma F, de Ridder S, Ramakers G, van Pelt J, van Ooyen A - NETMORPH: A framework for the stochastic generation of large scale neuronal networks with realistic neuron morphologies (2009), Neuroinformatics 7(3): 195-210.
  • Montez T, Poil SS, Jones B, Manshanden I, Verbunt JPA, Van Dijk BW, Brussaard AB, Van Ooyen A, Stam CJ, Scheltens P, Linkenkaer-Hansen K - Altered temporal correlations in parietal alpha and prefrontal theta oscillations in early-stage Alzheimer disease (2009), PNAS 106(5): 1614-1619.
  • Van Elburg RAJ, Van Ooyen A - Generalization of the event-based Carnevale-Hines integration scheme for integrate-and-fire models. (2009), Neural Computation 21(7): 1913-1930
  • Butz M, Wörgötter F, Van Ooyen A - A model for cortical remapping and structural plasticity following focal retinal lesions. (2009), BMC Neuroscience 2009, 10 (Suppl 1): P206. 18th Annual Computational Neuroscience Meeting, Berlin, Germany, 18-23 July 2009.
  • Butz M, Wörgötter F, Van Ooyen A - Modelling experience-dependent structural plasticity in cortical circuits (2009), 8th Dutch Endo-Neuro-Psycho Meeting, Doorwerth, The Netherlands, 3-5 June 2009, p. 171.
  • Gonzalez OJA, Van Elburg R, Mansvelder H, Van Pelt J, Van Ooyen A - Influence of external input on waxing and waning of neuronal network oscillations. (2009), 8th Dutch Endo-Neuro-Psycho Meeting, Doorwerth, The Netherlands, 3-5 June, p. 193.
  • Gonzalez OJA, Van Elburg R, Mansvelder H, Van Pelt J, Van Ooyen A - Influence of external input on waxing and waning of neuronal network oscillations (2009), BMC Neuroscience, 10 (Suppl 1): P257. 18th Annual Computational Neuroscience Meeting, Berlin, Germany, 18-23 July.
  • Groen MR, Meredith RM, Sterratt DC, Mansvelder HD, Van Ooyen A - Back propagating action potential and distant-dependent calcium signalling in CA1 pyramidal neurons. (2009), BMC Neuroscience, 10 (Suppl 1): P336. 18th Annual Computational Neuroscience Meeting, Berlin, Germany, 18-23 July.
  • Groen MR, Meredith RM, Sterratt DC, Mansvelder HD, Van Ooyen A - Distant-dependent calcium signalling in CA1 pyramidal neurons (2009), 8th Dutch Endo-Neuro-Psycho Meeting, Doorwerth, The Netherlands, 3-5 June, p. 194
  • Kaiser M, Hilgetag CC, Van Ooyen A - Random axon outgrowth and synaptic competition generate realistic connection lengths and filling fractions. (2009), BMC Neuroscience 2009, 10 (Suppl 1): P58. 18th Annual Computational Neuroscience Meeting, Berlin, Germany, 18-23 July.
  • Van Elburg RAJ, Bosman, LWJ, Ridder MC, Brussaard AB, Van Ooyen A - GABAA receptor plasticity provides homeostasis of neuronal activity in a neocortical microcircuit model. (2009), BMC Neuroscience 2009, 10 (Suppl 1): P218. 18th Annual Computational Neuroscience Meeting, Berlin, Germany, 18-23 July
  • Van Pelt J, Sander de Ridder, Sacha Hoedemaker, Frank Postma, Randal A. Koene, Arjen van Ooyen - Emerging synaptic connectivity in simulated networks of outgrowing neurons with realistic morphologies using NETMORPH. (2009), 2nd INCF Congress of Neuroinformatics. Pilsen, Czech Republic, September 6-8.
  • Watling L, Roelfsema P, Van Ooyen A - The attention-gated reinforcement learning model: performance and predictions. (2009), Frontiers in Systems Neuroscience. Conference Abstract: Computational and systems neuroscience. Computational and Systems Neuroscience, Salt Lake City, Utah, USA, 26 February - 3.
  • Butz M, Van Ooyen A, Worgotter - A model for cortical rewiring following differentiation and focal stroke (2009), Frontiers in Computational Neuroscience
  • De Ridder A, Postma, F, Hoedemaker S, Koene R, Van Pelt J, Van Ooyen A - Simulated networks with realistic neuronal morphologies show small-world connectivity (2009), BMC Neuroscience 2009, 10 (Suppl 1): P5. 18th Annual Computational Neuroscience Meeting, Berlin, Germany, 18-23 July
  • Van Pelt J, De Ridder S, Hoedemaker S, Postma F, Koene RA, Van Ooyen A - Emerging synaptic connectivity in simulated networks of outgrowing neurons with realistic morphologies using NETMORPH (2009), 2nd INCF Congress of Neuroinformatics. Pilsen, Czech Republic, September 6-8





    • Back
    Print
     
    Mentions legales - Crédits